PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.UD480

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 485aa MW: 55323.4 Da PI: 8.6381

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.UD480	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.6	2e-18	43	129	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ ++ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.UD480 43 KFYRNYAKAAGFSTRVRSTNRK--ENEIKNQLITCSREGKWKSKISL---TEKTNPTAGLNCPARIYIHTLKnVGAWIISKVVLDHSHPCCP 129 6**************98887..7779**********99887...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-16	43	129	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.334	288	324	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-4	296	321	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-4	299	326	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVPEFVPK VGMTFTTLED AGKFYRNYAK AAGFSTRVRS 60 TNRKENEIKN QLITCSREGK WKSKISLTEK TNPTAGLNCP ARIYIHTLKN VGAWIISKVV 120 LDHSHPCCPS KAEMLKQHRE LSMSIRHTIE NNEEADHHIW VPIYLDHHFW AGMRSTQRSE 180 SMHSFFNKFI TRNSSLIQFV KQYDNCLGSR EQAERESDAA DFHTVIPCAT KSSIEAQFQD 240 VYTHQKFRKV QAQFRGKANC ITRLTNSALG YSVYEVGEQV SSSIFNKFMV TYDSVEAEVK 300 CQCLLFESRG ILCRHALSVL SFERVKRRHT HIKSSHDEPL LEPRSKRFDQ LVFRSQNICE 360 FASESEELTA ILHRAYDNIM VEMESLKAKR KGTSSLSHED ANLESVNELQ SPPRIRTRGR 420 PKNRLGSKLD KQIANATKKK KTKALNEINL FDAASVVHSN SSQYQGHVMN YQFSVPGAGD 480 NSLGV

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MDDSTSDCQL NQGEVDYEFE SNEVPEFVPK VGMTFTTLED AGKFYRNYAK AAGFSTRVRS  60
TNRKENEIKN QLITCSREGK WKSKISLTEK TNPTAGLNCP ARIYIHTLKN VGAWIISKVV  120
LDHSHPCCPS KAEMLKQHRE LSMSIRHTIE NNEEADHHIW VPIYLDHHFW AGMRSTQRSE  180
SMHSFFNKFI TRNSSLIQFV KQYDNCLGSR EQAERESDAA DFHTVIPCAT KSSIEAQFQD  240
VYTHQKFRKV QAQFRGKANC ITRLTNSALG YSVYEVGEQV SSSIFNKFMV TYDSVEAEVK  300
CQCLLFESRG ILCRHALSVL SFERVKRRHT HIKSSHDEPL LEPRSKRFDQ LVFRSQNICE  360
FASESEELTA ILHRAYDNIM VEMESLKAKR KGTSSLSHED ANLESVNELQ SPPRIRTRGR  420
PKNRLGSKLD KQIANATKKK KTKALNEINL FDAASVVHSN SSQYQGHVMN YQFSVPGAGD  480
NSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.UD480

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445ESL4	0.0	A0A445ESL4_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-27	far-red elongated hypocotyls 3