PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.UF5MJ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 499aa MW: 57724.6 Da PI: 8.3568

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.UF5MJ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.4	1.3e-14	67	151	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfY++Y+k vGFs+r++ ++k+ +ei+++ +C++e k +++ + +++t+ + +C a++ ++ k + w ++k++l+H+H++ Araip.UF5MJ 67 KFYKDYSKLVGFSTRVRCTNKK--GNEIKNQLITCTREEKWKSKISP---TEKTNLSAGLNCAARIYIHVLKdVSFWIISKVVLHHSHPC 151 6*************998877..8889******999998776...899************988799***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.7E-12	67	152	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.137	299	335	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.7E-5	300	332	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.4E-4	310	337	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MDDSVSDSQL NQSEVDFETV SNDVPETFGC RSDKFGCIEG NFGCIYIDDQ FVLKVGMTFR 60 TLDDAAKFYK DYSKLVGFST RVRCTNKKGN EIKNQLITCT REEKWKSKIS PTEKTNLSAG 120 LNCAARIYIH VLKDVSFWII SKVVLHHSHP CYPDQAQMLK QNRELSLSVR HLYEDRHIWV 180 PIYLDHHFWA RMRSTQRSDN MHSFFNKFIT WTSSLIQFVK QYDNCLGSRE QAERELDAAD 240 FHMVIPCATK SFIEAQFQHE SPSTIQREAN CITRLINSAL GYSVYEVGEQ VSSSTFNKFV 300 VTYDSVAAQV KCQCLLFESR GILCRHALSV LSFERVTQVS PTYILEQWSK MVKRRHTHIK 360 SSHDEPLLEP RSKRFDELVF RSQNIYEFAS ESEELTAILH RAYDNVMVEM EKLKAKGRGH 420 VRYLMKMPTW NPLTSFKALQ GFEPEDIANA SRKKKTKALN KLNLFDSASV VHPNSSQYQE 480 RVMNYQFRKP AAGDNAVVY

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MDDSVSDSQL NQSEVDFETV SNDVPETFGC RSDKFGCIEG NFGCIYIDDQ FVLKVGMTFR  60
TLDDAAKFYK DYSKLVGFST RVRCTNKKGN EIKNQLITCT REEKWKSKIS PTEKTNLSAG  120
LNCAARIYIH VLKDVSFWII SKVVLHHSHP CYPDQAQMLK QNRELSLSVR HLYEDRHIWV  180
PIYLDHHFWA RMRSTQRSDN MHSFFNKFIT WTSSLIQFVK QYDNCLGSRE QAERELDAAD  240
FHMVIPCATK SFIEAQFQHE SPSTIQREAN CITRLINSAL GYSVYEVGEQ VSSSTFNKFV  300
VTYDSVAAQV KCQCLLFESR GILCRHALSV LSFERVTQVS PTYILEQWSK MVKRRHTHIK  360
SSHDEPLLEP RSKRFDELVF RSQNIYEFAS ESEELTAILH RAYDNVMVEM EKLKAKGRGH  420
VRYLMKMPTW NPLTSFKALQ GFEPEDIANA SRKKKTKALN KLNLFDSASV VHPNSSQYQE  480
RVMNYQFRKP AAGDNAVVY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.UF5MJ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-176	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	1e-159	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	8e-27	far-red elongated hypocotyls 3