PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.UGV6F
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 207aa    MW: 23651.7 Da    PI: 8.2133
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.UGV6FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.67.1e-32331252102
                   HHHHHHHHHCTG.GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeilede.elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl k+y++le++ +  +++sw+ +g+ f+v+ + ef++  Lp++Fkh+nf+SF+RQLn+YgFkk+++++         weFkh++F++g +++l +i
   Araip.UGV6F  33 FLLKTYDLLEESgNGGKIVSWNGDGSGFIVWSPAEFSDLTLPRFFKHNNFSSFIRQLNTYGFKKISSKR---------WEFKHEKFQRGCRDMLVEI 120
                   9*********8725579*************************************************999.........******************* PP

                   XXXXX CS
  HSF_DNA-bind  98 krkks 102
                    rkk 
   Araip.UGV6F 121 TRKKC 125
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3327118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.4E-4129123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-2830123IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.8E-113356IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-2833123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-117284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-118597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDSSNVLELN LGVGNNGGGQ VGQSVRPRCP APFLLKTYDL LEESGNGGKI VSWNGDGSGF  60
IVWSPAEFSD LTLPRFFKHN NFSSFIRQLN TYGFKKISSK RWEFKHEKFQ RGCRDMLVEI  120
TRKKCEPSVF PSYLKSSSEE NAITSNNSME ENNNNSHQLL MEENKNLKKE RLELQMQIAE  180
FKSLEMKLLE CLSQVMDNHQ NKSRGQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B2e-16331234104Putative transcription factor
5d5x_B2e-16331234104Putative transcription factor
5d5x_E2e-16331234104Putative transcription factor
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.UGV6F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193599.11e-152heat stress transcription factor B-2a-like
RefseqXP_025638231.11e-152heat stress transcription factor B-2a
TrEMBLI3SY631e-111I3SY63_LOTJA; Uncharacterized protein
STRINGGLYMA01G34490.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-34heat shock transcription factor B2A