PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.UK84R
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 437aa    MW: 48590.1 Da    PI: 7.1139
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.UK84RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.9e-33154211260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+ +C+vkkkver+  d++++ei+Y+g+Hnhek
  Araip.UK84R 154 DDGYNWRKYGQKQVKGSEFPRSYYKCTHLSCNVKKKVERAI-DGHITEIIYKGQHNHEK 211
                  8****************************************.***************85 PP
2WRKY105.72.3e-33333391159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k++er++ dpk+v++tYeg+Hnh+
  Araip.UK84R 333 LDDGYKWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHIERASMDPKAVITTYEGKHNHD 391
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-28145212IPR003657WRKY domain
PROSITE profilePS5081123.491148212IPR003657WRKY domain
SuperFamilySSF1182901.06E-25150212IPR003657WRKY domain
SMARTSM007748.5E-36153211IPR003657WRKY domain
PfamPF031065.2E-25154210IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-36318393IPR003657WRKY domain
SuperFamilySSF1182901.23E-28325393IPR003657WRKY domain
PROSITE profilePS5081138.423328393IPR003657WRKY domain
SMARTSM007743.3E-38333392IPR003657WRKY domain
PfamPF031061.0E-25334391IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MPTDSHSPAR PTITLPPRPS LESFLSSVGI SPGPMTLVSS FFADDYSPSP SSFSQLLSVT  60
PSPLFTVPPG FSPSAFLFSP THPQSPFGMS HQQALAQVTT EAVIAQSQGQ MQIDEDDASE  120
KNVEVSMFET SHMSNNADKK YQQPSSVVAD KPADDGYNWR KYGQKQVKGS EFPRSYYKCT  180
HLSCNVKKKV ERAIDGHITE IIYKGQHNHE KPHSNKRNKD NNDSNESVSI QPKSELSSQG  240
CWVGNSDSFG KGFSDCSISE DLGGVDMREE EGDDVEPNPK RRQVSVSPFL SSFKMQASFV  300
CCRNIDVGVY EAHQTTVTEP KIIVQTKSEV DLLDDGYKWR KYGQKVVKGN PHPRSYYKCT  360
SAGCNVRKHI ERASMDPKAV ITTYEGKHNH DVPASRKSSH NSSKPHKAVP EKQSDMDFEN  420
SNQRPIHLSL KEEQIIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-39154394878Probable WRKY transcription factor 4
2lex_A1e-39154394878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.UK84R
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016180236.10.0probable WRKY transcription factor 4 isoform X2
RefseqXP_025683102.10.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9ZQ701e-116WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A444X8E20.0A0A444X8E2_ARAHY; Uncharacterized protein
STRINGGLYMA18G49830.11e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-106WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]