PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.UM6QW
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 161aa    MW: 18273.2 Da    PI: 10.4809
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.UM6QWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF337.5e-112047128
                 S---SHHHHHHHHHHHHHHHHHHHHHHH CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELS 28
                 krienk n q+ f+kR+ g+lKKA+E+ 
  Araip.UM6QW 20 KRIENKKNFQIAFTKRKDGLLKKANEIK 47
                 79************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-41259IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.3761249IPR002100Transcription factor, MADS-box
CDDcd001201.42E-111348No hitNo description
SuperFamilySSF554553.14E-111360IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-101434IPR002100Transcription factor, MADS-box
PfamPF003192.1E-82149IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-103449IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MENGGEMIKK TKGRQKRDIK RIENKKNFQI AFTKRKDGLL KKANEIKIFI GKAYCYGDSS  60
LKTIKMALSN EQQPQGSNQF LGYIMEEMSR MDMQNLVKKN DSLVDRLNAK KERAETLSNT  120
LKNQISLKII ANQAAVMTAA ESVAPIFYHG DSTIKQNPLL N
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.UM6QW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016164178.18e-79agamous-like MADS-box protein AGL28
RefseqXP_025664396.18e-79agamous-like MADS-box protein AGL28
TrEMBLA0A444YDE32e-77A0A444YDE3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1915424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.17e-11M-type_MADS family protein