PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.UN40X
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 438aa    MW: 50203.6 Da    PI: 8.1157
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.UN40XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.5e-18195241148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l ++vkq+G + W+ Ia+++  gR +kqc++rw+++l
      Araip.UN40X 195 KGQWTPEEDRKLEKLVKQHGIRKWSQIAEKLE-GRVGKQCRERWHNHL 241
                      799*****************************.*************97 PP
2Myb_DNA-binding50.54.8e-16248289245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eE+ +lv+ + + G++ W+ Ia++++ gRt++++k++w+
      Araip.UN40X 248 DGWSEEEERILVETHMKIGNR-WAEIAKRIP-GRTENSIKNHWN 289
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.905190245IPR017930Myb domain
SuperFamilySSF466898.24E-30192288IPR009057Homeodomain-like
SMARTSM007176.1E-16194243IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-28196249IPR009057Homeodomain-like
CDDcd001672.53E-15198241No hitNo description
PfamPF139211.1E-18198255No hitNo description
SMARTSM007171.4E-14246294IPR001005SANT/Myb domain
PROSITE profilePS5129418.165246296IPR017930Myb domain
CDDcd001672.74E-11250292No hitNo description
Gene3DG3DSA:1.10.10.607.4E-20250294IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MKSSTPLKAL SGNSSSSVHH HDNDIIPFLH HEYGGNMMNK VTTSYSFNNP SMCRLGFPLT  60
AIDRFLCSQQ QSQVLHRKHQ QHNDDDVAKN NNNVSVFDED FHTRFSNCYY GGASNNPYYK  120
FEWPNCTTQE ASLVVDDDHD HHLLAISSAD QEEGFNWLQK FLTFCHNKED VQALGENHKI  180
RGRNPKKGSS ISLIKGQWTP EEDRKLEKLV KQHGIRKWSQ IAEKLEGRVG KQCRERWHNH  240
LRPDIKKDGW SEEEERILVE THMKIGNRWA EIAKRIPGRT ENSIKNHWNA TKRRQNSRRK  300
NKKPSSSSTT SNNNGKPQSS ILQDYIRSKT LIGTNNITVP ITTTTTNSTP TITSESESIT  360
NNSDINNNPY YSSPTIIAES SYDDELLFMQ QLFKENNQIV NGNAVIKNPN DECGDGFVHY  420
SNYYYPPNPG NMHNPIIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-431932952104C-Myb DNA-Binding Domain
1msf_C9e-431932952104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.UN40X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016186027.10.0transcription factor MYB98-like
RefseqXP_025636325.10.0transcription factor MYB119-like
SwissprotQ9FIM41e-69MY119_ARATH; Transcription factor MYB119
TrEMBLA0A445AKV80.0A0A445AKV8_ARAHY; Uncharacterized protein
STRINGXP_004500264.11e-105(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.14e-58myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]