PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.UR33Y

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Protein Properties

Length: 169aa MW: 18689.5 Da PI: 6.5054

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.UR33Y	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.3	1.8e-15	51	141	1	96
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f vl++s+v +s+++ p k + ++ + e t+ g+sW++ ++ +gr ++ +GW++Fvkan L egD +vF+l+ +s+++ v+ v Araip.UR33Y 51 FHVVLSKSHVRRSCLMG-PSKDLVDIlP-SA-E--VPTVLKCGGESWDMVYR-GHAPGRKFFDGGWRKFVKANCLVEGDACVFELMANSDEKIVFEV 141 66788899999998555.8888878842.22.2..34777889******3.45566799***********************99888777654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.2E-18	46	145	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.26E-17	46	145	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.09E-17	49	145	No hit	No description
PROSITE profile	PS50863	12.041	50	147	IPR003340	B3 DNA binding domain
SMART	SM01019	3.4E-9	51	147	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.7E-14	51	140	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MKLCMQHLNL TSTNSNFAVS VEEQAPLPKP ADPAANLSSD EIAPLSGNPF FHVVLSKSHV 60 RRSCLMGPSK DLVDILPSAE VPTVLKCGGE SWDMVYRGHA PGRKFFDGGW RKFVKANCLV 120 EGDACVFELM ANSDEKIVFE VQILRGDVPK VFFKRDRIGE SEQKPIVID

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.UR33Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020971676.1	1e-108	B3 domain-containing protein Os04g0386900-like
Refseq	XP_025633334.1	1e-108	B3 domain-containing protein Os04g0386900
TrEMBL	A0A445ECS2	1e-120	A0A445ECS2_ARAHY; Uncharacterized protein
STRING	GLYMA07G35040.3	8e-43	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9722	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	1e-11	related to vernalization1 1