PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.UR8RX
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 83aa    MW: 9269.71 Da    PI: 10.9898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.UR8RXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000686280523
                 TTTEEESSHHHHHHHHHHT CS
      zf-C2H2  5 dCgksFsrksnLkrHirtH 23
                 +C+k F r  nL+ H + H
  Araip.UR8RX 62 ICNKGFQRERNLQLHRKGH 80
                 8***************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MCNLTSASNK GTKIGTFMTP PPISSDTSTQ PPSKKKRNLP DAEVIALSPK SLLATNRFMF  60
EICNKGFQRE RNLQLHRKGH NQL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.UR8RX
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016176182.13e-38protein indeterminate-domain 7
RefseqXP_025676394.13e-38protein indeterminate-domain 7
SwissprotQ8GYC13e-21IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
SwissprotQ8RWX73e-21IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLA0A444XDN47e-37A0A444XDN4_ARAHY; Uncharacterized protein
STRINGGorai.010G099600.17e-24(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1535369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-23C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]