PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.UW8U0
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 462aa    MW: 52706.3 Da    PI: 7.6057
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.UW8U0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.44.9e-1851137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk + + +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.UW8U0  51 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKYKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKIVLDHSHPCCP 137
                  6****************98887..8889**************99877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1551137IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MDDSTSDCQL NPGEVDYEFE SNEVLEPLSV VDDQLVPKVG MTFITLEDAE KFYRNYAKAA  60
GFSTRVRSTN RKGNEIKNQL ITCSREGKWK YKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKIVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDHH IWVPIYLDHH  180
FWVGMRSTQR SESMHSFFNK FITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC  240
ATKSFIEAQF QDAYTHQKFR EVQAQFRGKA NCITRLTNST LGYSVYKVGE QVSSSIFNKF  300
VVTYDSVAAE SIHDEPLMEP RSKRFDQLVF RSQNICEFAS ESEELTAILH RAYDNVMAEI  360
ESLKAKRKGT SSLSHEDANL ESVNELQSPP RIRTRGRPKN RLGSKLDKQI ANATKKKKMK  420
VLSEINLFDA ASVVHSNSSQ YQGHVMNYQF RVPAAGDNSL GV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.UW8U0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-178protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445CSB70.0A0A445CSB7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.26e-15far-red elongated hypocotyls 3