PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.V0C5X
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 422aa    MW: 47565.7 Da    PI: 7.2296
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.V0C5XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.8e-16110155147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
      Araip.V0C5X 110 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 155
                      899*****************************.***********996 PP
2Myb_DNA-binding55.61.2e-17162205146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
      Araip.V0C5X 162 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 205
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.17105156IPR017930Myb domain
SMARTSM007172.9E-14109158IPR001005SANT/Myb domain
SuperFamilySSF466897.49E-28110203IPR009057Homeodomain-like
PfamPF002498.7E-16110155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-25111163IPR009057Homeodomain-like
CDDcd001673.04E-13113154No hitNo description
PROSITE profilePS5129426.472157211IPR017930Myb domain
SMARTSM007175.5E-14161209IPR001005SANT/Myb domain
PfamPF002492.4E-14162204IPR001005SANT/Myb domain
CDDcd001679.32E-12164204No hitNo description
Gene3DG3DSA:1.10.10.602.7E-20164210IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MNSCPSTFIY SSSSQQNTSN SMGMVYEDMA SLSLCSNYTL TPSAPSWGFP FEEHPTHNSD  60
LVEGTTKGSD SSEDNGVIGE NNNNNNNNNN NNPNNKEGES SSGQSKLCAR GHWRPAEDSK  120
LKELVALYGP QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI TRRAFSEEEE ERLMQAHRIY  180
GNKWAMIARL FPGRTDNAVK NHWHVIMARK YREQSSAYRR RRLTQSNNFY RRIDHNNNHN  240
NNNNVSSESS PPPHCFVAGF SSLPFHGGVL DFGANNKPYA AVASSSSSTF NFFSGGRGNN  300
NSSSNSEMVG GEYYYGSNHH HHYNQQQAHN NNHAYYTRYP NHQYMMMMMP SVQQHQNNNH  360
NKNFYSFSSN SSTTVAQVLG SDPSLSSMAE QQHRDHEEAS DPPTTIPETP LFIDFLGVGA  420
TT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-331102107107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222YRRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.V0C5X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193685.10.0transcription factor MYB117
RefseqXP_025640880.20.0transcription factor MYB117-like
TrEMBLA0A445DNV10.0A0A445DNV1_ARAHY; Uncharacterized protein
STRINGGLYMA07G35581.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.12e-75myb domain protein 117