PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.V1CV3
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 231aa    MW: 26269.1 Da    PI: 9.2142
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.V1CV3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.2e-11521271696
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    lpkkf +++g   +++  + l+ ++g +W++    + ++g++++++GWkeF++   L+ g ++ F + + ++ +  v++
  Araip.V1CV3  52 QKLPKKFSKKYGDGVPNP--VYLKPPDGTVWKIDW--SLYDGMILFENGWKEFASYYSLDNGHMLFFAYYN-ETSNIEVHI 127
                  479********5554565..***************..*******************************876.444456665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1435129IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-1036129No hitNo description
SuperFamilySSF1019361.29E-1536129IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.89937131IPR003340B3 DNA binding domain
SMARTSM010193.9E-737131IPR003340B3 DNA binding domain
PfamPF023626.4E-951128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MASSIFQRNK HSPSSVISFF KIGLKKALKM ETLVSSFMLI TKTSFILSFE LQKLPKKFSK  60
KYGDGVPNPV YLKPPDGTVW KIDWSLYDGM ILFENGWKEF ASYYSLDNGH MLFFAYYNET  120
SNIEVHIHDI ISGFEINYPS LDHISHDNSI KILNELPPRG WPRKKVKAAA EVSSPSTSKR  180
LRSSVKTGDV EKGPDKQNWM QCCKNEEASQ SEETGLKMPT IQSARVDPDS M
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.V1CV3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020970390.11e-172B3 domain-containing protein At1g49475-like
TrEMBLA0A444XA761e-126A0A444XA76_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-12B3 family protein