PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.V1VB7
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 238aa    MW: 26579.1 Da    PI: 8.5267
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.V1VB7genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-1364110354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+v+ +k+L
  Araip.V1VB7  64 RNHKEAEKRRRERINSHLARLRTLLPCN-----SKTDKASLLAKVVQRVKEL 110
                  58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.66361110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-1064113No hitNo description
PfamPF000101.2E-1064110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1465129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1565132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1167116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.0E-4149204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDHNNSDLFQ LLGAGAGGGY YPAAAMLMMD HHHQHQVSSD DNMSAIETQA SHHQQQDRAL  60
AALRNHKEAE KRRRERINSH LARLRTLLPC NSKTDKASLL AKVVQRVKEL KQQTSEIITE  120
FETLPSETDE ISVLSTADGG HGGLIFKASL CCEDRSDLIP ELIEILKSLH LKTLRAEMAT  180
LGGRTRNVLV VAADKEHNSI ESIHFLQNSL RSLLERSGSA DRSKRRRAMD RRFTPASS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.V1VB7
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016182383.11e-175transcription factor bHLH106
RefseqXP_025684182.11e-175transcription factor bHLH106
SwissprotQ9LET01e-74BH107_ARATH; Putative transcription factor bHLH107
TrEMBLA0A444X9651e-174A0A444X965_ARAHY; Uncharacterized protein
STRINGAES811731e-101(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]