PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.V2LRG
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 176aa    MW: 20026.4 Da    PI: 10.3119
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.V2LRGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-151362147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                     +g+W+ +Ed+ l ++v+ +G g W ++a+       gRt++++k++w++ 
      Araip.V2LRG 13 KGAWSRDEDQTLSKYVAIHGEGKWQKVAQNAAkrlPGRTDNEIKNYWNTN 62
                     79**************************99999999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-20671IPR009057Homeodomain-like
PROSITE profilePS5129420.723867IPR017930Myb domain
SuperFamilySSF466891.65E-14868IPR009057Homeodomain-like
SMARTSM007171.2E-131265IPR001005SANT/Myb domain
PfamPF002491.1E-131363IPR001005SANT/Myb domain
CDDcd001671.61E-121563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGRRPCCSKE MNKGAWSRDE DQTLSKYVAI HGEGKWQKVA QNAAKRLPGR TDNEIKNYWN  60
TNLSKKLQQQ QQQWQPPPPS SSSSHKHKNN LTHKHVLVAP QTPIPRRLKA FHYNNNDNNN  120
NNTSISPCKQ SNPSSSSLLS SSDQCNNLFM SEKFDPLETL LDVELKRVAS FLGLKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.V2LRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025680119.13e-59transcription factor WER
TrEMBLA0A444XGG62e-56A0A444XGG6_ARAHY; Uncharacterized protein
STRINGXP_007135451.16e-48(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.16e-18myb domain protein 7