PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.V2WCU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 164aa    MW: 19167.3 Da    PI: 4.9501
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.V2WCUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.77.9e-1375145171
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkke 71 
                  +fY +YAk  GF  rk+ ++  + ng+i +r++vC+k g+r  ++ k ++ +r++ra tr++C+a+++  ++
  Araip.V2WCU  75 EFYAKYAKCYGFVSRKDLKTV-DANGNINTRQLVCNKAGERYWKHLKrDNWQREHRAITRVNCRARIRFIRH 145
                  6***********998886555.69999*************98777664688999************997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.4E-1175144IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MENDGKESYK DGDQSEDLSV EYECSSDESN DMVDVTVDEA EAYIINADGF EKLITDLTIE  60
DIWGLVFDTE SQVCEFYAKY AKCYGFVSRK DLKTVDANGN INTRQLVCNK AGERYWKHLK  120
RDNWQREHRA ITRVNCRARI RFIRHYRTGY LRLVDYRAPT SFGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.V2WCU
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020967687.11e-107protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445A6K61e-92A0A445A6K6_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1535229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-09FAR1 family protein