PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.V37WV
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 229aa    MW: 26114.8 Da    PI: 7.5246
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.V37WVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1423.1e-1375164191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +fY +Y k  GF  +k  ++   + + i +++f  + e   e++ k  +  + +ra t+++Cka++++  ++ +gkw+v+ +e+eHnH+l+p
  Araip.V37WV  75 EFYAKYVKCYGFVSQKGLKTIL-KATLIQDNWFAIKHEKDIESTLKG-TIDKGHRAITQVNCKARIRLIHHYrTGKWKVSVFENEHNHSLCP 164
                  6***********9999987777.555599999998888888888887.89999**************888887*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.9E-1075164IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MENDGKESYK DGHQSKDLSV EYECSSNESD DMVDVTVDKA EADTISIDGF EKLITDLTIE  60
DIWRLVFDME SQVCEFYAKY VKCYGFVSQK GLKTILKATL IQDNWFAIKH EKDIESTLKG  120
TIDKGHRAIT QVNCKARIRL IHHYRTGKWK VSVFENEHNH SLCPPKYRHL VAMNRGLNDA  180
DKTYADNLRA CGVKTCHIMG YMISQKGGYD KVGFTSKNLT TLLRLGVAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.V37WV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015933173.11e-112protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020981383.11e-112protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A444X5T46e-95A0A444X5T4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1535229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-16FAR1-related sequence 5