PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.V5K8G
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 558aa    MW: 60595.7 Da    PI: 8.1093
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.V5K8GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.18.1e-20208296391
         FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  Y+e+A+  GF vrk    +   ng  ++r+f C ++g+r++++ +  e+ r++r e+rt+Ckaklk+  +  +++w+v ++  eHnHelap
  Araip.V5K8G 208 YKEFARVRGFGVRKGDVARV--NGVLVRRDFFCHRQGTRHPKHYDrPERVREERLESRTDCKAKLKIYYDVqHSVWKVRTIMDEHNHELAP 296
                  9**************99998..*******************999856778889***************99989***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-18208296IPR004330FAR1 DNA binding domain
PROSITE profilePS501588.664394409IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
LNGVLIVSRS VGGRLATWAL FGAKKPKKVG TQPLGLGFNH LITLKEALSA VRRTDVAVVV  60
AAARVGGARD PLVVKLVRGG EGAGPLREAL VSSWCGVEEQ RVVILNVAQR WPMEFNRIFD  120
SEGQDSDGDS SDDCSGHYHG TDEEYDEEEG FEAQCGPKAR EKGVGDGVNC RGSGSASEEA  180
GGMPSRQVFA DDFLGREFAT EEDAYAAYKE FARVRGFGVR KGDVARVNGV LVRRDFFCHR  240
QGTRHPKHYD RPERVREERL ESRTDCKAKL KIYYDVQHSV WKVRTIMDEH NHELAPAIHQ  300
GRLLRYGALT GLMSLVAKLG SEDAEEFVVA RDGIANLAEE LQRRAYDRVG SQLGLSSLSA  360
LNDPLVAKTK GAPRKGKEPE PEPGTQSEVP TKRRRCTSCG VPGHTKRTCS WRREHRGAGT  420
EGGKVPGCVE CSSDVRSFPS ATAKVWEAIN SDTGDNGRTA PTRAEGAEMT SNHGCSRTAC  480
NPLMGVGGGG TNIFLGGQHI EQFFASQGCS VKKGESHGTA ASPSMSNPTR HTNDELFEHW  540
LSQNAAGRPS SSRRHGWT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.V5K8G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184350.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_016184351.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020972102.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025634368.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_025634370.10.0protein FAR1-RELATED SEQUENCE 5
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.13e-11FAR1-related sequence 10