PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.V6DM9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 190aa    MW: 21166.9 Da    PI: 5.8175
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.V6DM9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.2e-054163123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ Fs+   L  H+++H
  Araip.V6DM9 41 YECNFCKRGFSNAQALGGHMNLH 63
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.29E-73868No hitNo description
Gene3DG3DSA:3.30.160.602.3E-43967IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4274168IPR007087Zinc finger, C2H2
PfamPF139121.5E-54165IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEKQSDDDQD HRRTAEKVVV SSSSDGNEVQ AVNNVNPTRS YECNFCKRGF SNAQALGGHM  60
NLHRKDKAKI KEQQQFSSSS NQTTHHQQFL LEGNLGSNND NNNKELLNVP HQPVMDDETN  120
NNNVVMMRQL PLFSESSSSP HHLQQQEDQI SGQQGPSSSS ELDLELRLGL EPPQGSNSSS  180
ATITGTRKFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.V6DM9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016191514.11e-138transcriptional regulator TAC1-like
RefseqXP_025637009.11e-138transcriptional regulator TAC1-like
TrEMBLA0A445A9E21e-137A0A445A9E2_ARAHY; Uncharacterized protein
STRINGXP_004507179.12e-30(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.17e-15C2H2 family protein