PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.V6XXN
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 181aa    MW: 20587.6 Da    PI: 10.4616
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.V6XXNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-1852105356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+ ++tkeq + Le+ F+++ +++ ++++ LA++l+L++rq+ vWFqNrRa+ k
  Araip.V6XXN  52 KKLRLTKEQSTMLENSFNQHTTLNSAQKKSLAEELNLKTRQIEVWFQNRRARTK 105
                  66789***********************************************98 PP
2HD-ZIP_I/II114.37.6e-3751143193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kk+rl+keq+++LE+sF+++++L++ +K++la+eL+l++rq++vWFqnrRARtk+kq+E+d+e Lk+++++l++en+rL+ke ee++++lk+
  Araip.V6XXN  51 NKKLRLTKEQSTMLENSFNQHTTLNSAQKKSLAEELNLKTRQIEVWFQNRRARTKLKQTEVDCELLKKRCQSLTDENRRLKKELEEVTAALKA 143
                  59*************************************************************************************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1835108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-1736105IPR009057Homeodomain-like
PROSITE profilePS5007116.63347107IPR001356Homeobox domain
SMARTSM003893.5E-1449111IPR001356Homeobox domain
PfamPF000461.7E-1552105IPR001356Homeobox domain
CDDcd000863.71E-1352108No hitNo description
PROSITE patternPS00027082105IPR017970Homeobox, conserved site
PfamPF021835.5E-8107141IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.5E-14107151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTGLSLALAG TVVPNNKKNK PLMVSLHQKK FCSTHQRIDD DGGHHHHHHN NKKLRLTKEQ  60
STMLENSFNQ HTTLNSAQKK SLAEELNLKT RQIEVWFQNR RARTKLKQTE VDCELLKKRC  120
QSLTDENRRL KKELEEVTAA LKATTTTTSP PSLYIQHSKA SPATTLTMCS SCHKLLLPNS  180
N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199107RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.V6XXN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016178158.21e-130homeobox-leucine zipper protein HOX1-like
RefseqXP_025631180.11e-130homeobox-leucine zipper protein HOX1
SwissprotP466021e-44HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A445AUR91e-129A0A445AUR9_ARAHY; Uncharacterized protein
STRINGGLYMA09G07051.11e-47(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-38homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]