PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.V81BW

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 228aa MW: 25755 Da PI: 7.7972

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.V81BW	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.2	2.6e-18	51	136	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++YAk +GFs+r++ ++++ ++ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++ Araip.V81BW 51 KFYRNYAKAAGFSTRVRCTNRK--ENEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCC 136 6*************988776..7779*********998877...8999**********998879************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-15	51	136	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MDHSTSDSQL NSGEVDYEVE SNEVPEPLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAA 60 GFSTRVRCTN RKENEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSHPCCLSKA EMLKQHRKLS MSIRRTIENN EEAGMRSTQR SESMHSFFNK 180 YITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC ATKSPANV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.V81BW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-171	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997160.1	1e-113	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020997362.1	1e-112	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445A1M9	1e-149	A0A445A1M9_ARAHY; Uncharacterized protein
TrEMBL	A0A445CSB7	1e-149	A0A445CSB7_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-11	FAR1 family protein