PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.V8F5Z
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 358aa    MW: 40042.4 Da    PI: 6.4402
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.V8F5ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
      Araip.V8F5Z 14 KGLWSPEEDEKLFNHITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding47.34.7e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
      Araip.V8F5Z  67 RGMFSQQEEDLIISLHEILGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.333961IPR017930Myb domain
SuperFamilySSF466891.3E-2812108IPR009057Homeodomain-like
SMARTSM007179.7E-121363IPR001005SANT/Myb domain
PfamPF002491.1E-131461IPR001005SANT/Myb domain
CDDcd001676.86E-111761No hitNo description
PROSITE profilePS5129424.4762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2565117IPR009057Homeodomain-like
SMARTSM007178.9E-1466114IPR001005SANT/Myb domain
PfamPF002494.8E-1467111IPR001005SANT/Myb domain
CDDcd001671.00E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGRHSCCVKQ KLRKGLWSPE EDEKLFNHIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHEILGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLVKQG  120
IDPATHKPLS TDDQKEEESC SKKIITPSEN SKIQIPFSTA LASSLNDSGY YAGDDNSNAI  180
TEASRDIFMT SNNNKPTFLD PLSSFYADFP HQPNNYHHLA PVTAVTNYCG GGFSSMPSLT  240
NSDQGGHVSV TDQFMNSNKE SSSNNSSSNM YTSVTGFSSS SPWDATAENI TNKLVEPFFQ  300
FSAIKCEDLY KTTCSSWEED QEHTHTNTAS SSIHFTTYPL TSLSEDLTAA NFDVFHHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.V8F5Z
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016176267.10.0transcription factor MYB86-like
RefseqXP_025629058.10.0transcription factor MYB86
SwissprotQ8LPH68e-83MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A445EQA50.0A0A445EQA5_ARAHY; Uncharacterized protein
STRINGGLYMA05G02550.21e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-84myb domain protein 86