PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.V9N10

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 202aa MW: 22253.2 Da PI: 7.7672

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.V9N10	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.5	2.6e-39	19	118	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pe++red+++sl+yeAear+rdPvyG++g i lq+++ +l+++la +k Araip.V9N10 19 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEDQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMLELQHDLAIAK 116 6*********************************************************************************************9998 PP DUF260 99 ee 100 ++ Araip.V9N10 117 DR 118 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.303	18	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-38	19	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MKKSGGGIMK GYEPRSSSSC AACKFLKRRC IPNCIFAPYF RSDECKKFAK VHKVFGASNV 60 SKILVEVPED QREDTVNSLA YEAEARLRDP VYGCIGAIAL LQRKMLELQH DLAIAKDRLA 120 RYSAVAATAD ATSLITSSSS SSDNIFHFNN SQVSLPPFPE FPSSSDFNDT AAFCHASSSS 180 SQSFPRHDTT VVDDFIQIPY IF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-47	14	123	6	115	LOB family transfactor Ramosa2.1
5ly0_B	5e-47	14	123	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.V9N10

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016165534.1	1e-148	LOB domain-containing protein 21-like
Refseq	XP_025669058.1	1e-148	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	1e-63	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A444YDJ5	1e-147	A0A444YDJ5_ARAHY; Uncharacterized protein
STRING	GLYMA14G06270.1	2e-95	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	4e-65	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]