PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VHN6L
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 437aa    MW: 49920.8 Da    PI: 8.6665
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VHN6LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.71.4e-1651137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GF +r+++++k+   +ei+++  +Cs+e k +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.VHN6L  51 KFYKDYAKATGFFTRVRSTNKK--GNEIKNQLITCSRERKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLHHSHPCCP 137
                  6****************98887..8889************9998777...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-1451137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.087243279IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDDSTSDCQL NQCEVDFEFE SNEVSEPFCD VDDQFVPKVG MTFNTLKDAA KFYKDYAKAT  60
GFFTRVRSTN KKGNEIKNQL ITCSRERKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLH HSHPCCPTQA EMLKQHRELS MSVRRTIENN EEAEAGSKER ESDAADFHTI  180
IPCATKSSIE AQFQHVYTHQ KFREVQEQFR GKANCITRLT NSALGYSVYE VGEQVSSSIF  240
NKFAVTYDSV AAQVKCQCLL FESRGILCRH ALCVLSFQRA IQVSPRYILE QWSKKVKWQH  300
THIKTSHDES LLEPRSKRFD ELVLRLQNIC EFASESEELT AILHRAYDNV MVEMEELKAK  360
RKGTCSLSHE DANLESVNKL QSPPRVRTRV RLKSRLGLKL DKQIANASKK KKTKALNEFR  420
ELAAGDSFLG YSNRIGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.VHN6L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954109.11e-152protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445AIN50.0A0A445AIN5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.23e-17FAR1-related sequence 4