PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VJ4S9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 393aa    MW: 45118.3 Da    PI: 9.9983
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VJ4S9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.7e-09366387426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   lCr++ar G C +Gd+CkF H+
  Araip.VJ4S9 366 QLCRYYAR-GRCYFGDNCKFVHD 387
                  69******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689066.23E-54282No hitNo description
PfamPF020378.4E-74781IPR003034SAP domain
Gene3DG3DSA:1.10.720.301.5E-54882IPR003034SAP domain
SuperFamilySSF902295.63E-8362387IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892363389IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5363388IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-6365387IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-6365387IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
RVVDGTNPQE IEITTPAFNE ANFERVERLI KDFLDVLLLC WLTGGMLERL KVDECKLYLR  60
KNCLRLSGNK DVLVQRIKEH LQIINGGGER KYPPSSFVLD CKGDACTGDV VLFEQNVYEM  120
FNIASRSASG PSCGKRTVAG RIVKESYGTA KQQHTFTIEV LWSKGEKPFP PLHPLLIKGR  180
NLYRLKTLRQ KWEDEGERQK ILTEKHSRGS IAREDREARV QEKVNRKAIV ENRVSRKHSV  240
IHHPHAINQE KPAFPSKSSA VSAINQEKPP FPSVVTEQGG KSVSSRRSNE STSFGVNHVN  300
NQQDWKHSSD PIIKAQLGDL HSKQKEQYQY QYHPSERNRF AQRNPLTSAN HLLPLLNNRE  360
IHKQKQLCRY YARGRCYFGD NCKFVHDLIL SNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.VJ4S9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025677852.10.0zinc finger CCCH domain-containing protein 62
SwissprotQ338N27e-74C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLA0A444XFQ40.0A0A444XFQ4_ARAHY; Uncharacterized protein
STRINGXP_004510536.11e-139(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]