PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VKG2P
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 286aa    MW: 32368.8 Da    PI: 5.9666
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VKG2PgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.5e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W + Ed+ll  +v+q+G g W++++++ g++R++k+c++rw++yl
      Araip.VKG2P  9 KGAWAKVEDDLLRACVEQYGEGKWHLVPSRAGLNRCRKSCRLRWLNYL 56
                     799*******************************************97 PP
2Myb_DNA-binding43.28.9e-1462106147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg + ++E +l ++ +++lG++ W++Ia +++ gRt++++k++w++y
      Araip.VKG2P  62 RGEFAEDEVDLMIRMHRLLGNR-WSLIAGRLP-GRTPNDVKNYWNTY 106
                      788999****************.*********.************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.789460IPR017930Myb domain
SuperFamilySSF466895.86E-266103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-21659IPR009057Homeodomain-like
SMARTSM007171.8E-13858IPR001005SANT/Myb domain
PfamPF002493.5E-14956IPR001005SANT/Myb domain
CDDcd001671.78E-81156No hitNo description
Gene3DG3DSA:1.10.10.603.6E-2160110IPR009057Homeodomain-like
SMARTSM007172.4E-1361109IPR001005SANT/Myb domain
PROSITE profilePS5129417.16561111IPR017930Myb domain
PfamPF002492.0E-1262106IPR001005SANT/Myb domain
CDDcd001671.62E-864107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEGSIGLRKG AWAKVEDDLL RACVEQYGEG KWHLVPSRAG LNRCRKSCRL RWLNYLKPNI  60
KRGEFAEDEV DLMIRMHRLL GNRWSLIAGR LPGRTPNDVK NYWNTYVRRN NKHTSSSSTP  120
SVPSPSSVVT TVKRHDHINH QVIKPHPRTF SKASPWLLLK KTSASGDHNN SKQRDGAKAE  180
EECTDNNNNG SGGGCDDGDT CRDKNGGKGD EEKLNDGCLL SVSGAEEEEE EEEEDWKLLL  240
PDFNWDAHND DHFLKDASDA DQDMLINVHG QTWSDILLDI NLWDPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2271095106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.VKG2P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179258.10.0transcription factor MYB90-like
RefseqXP_025680453.10.0transcription factor MYB90-like
SwissprotQ9FNV99e-56MY113_ARATH; Transcription factor MYB113
TrEMBLA0A444X8B20.0A0A444X8B2_ARAHY; Uncharacterized protein
STRINGGLYMA09G36966.11e-71(Glycine max)
STRINGGLYMA19G02980.22e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]