PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.VKQ77

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 695aa MW: 81310.4 Da PI: 7.0918

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.VKQ77	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.8	2.3e-10	108	159	1	53
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr 53 +fY++Y++ GF +r+ k+ k+ rngei+++t+ C++eg+r+++++ +e+ ++ Araip.VKQ77 108 RFYEQYSRAKGFGMRQGKKLKN-RNGEIVRYTYLCNREGFRDRTEEGEESPNE 159 5***************9998.8999*************99888333222 PP
2	FAR1	63.5	5.9e-20	191	280	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY++Y + GF +r+ k+ k+ rngei+++t+ C++eg+r+++ + ++ +r++++ t +gC+ ++++k++ +++w+v +++ eHnH+l Araip.VKQ77 191 RFYEQYEQYSGFGMRQGKKLKN-RNGEIVRYTYLCNREGFRDRKWLEmQDWKREHKVFTCCGCQVEMRIKQKAeSSNWYVCRFVDEHNHDL 280 5***************9998.8999***********99888566788889999********9999************98 PP
3	FAR1	38.8	3.1e-12	438	481	49	91
FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +++r+++++tr+gC+a++++k++ +++w+v +++ eHnH+l p Araip.VKQ77 438 DTKREHKVVTRCGCQAEMRIKRKAeSNNWYVCRFVDEHNHDLLP 481 578999***************99**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-7	108	157	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	9.8E-18	191	281	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.6E-9	438	481	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.163	647	685	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence Send to blast
MLCGFAAVLV KRFMSNRFLG EVVLAEAERT IPGLDACGEE NFDGFRDTGD IDATESLLDI 60 GMKTEEEELG EESPNEEHCE QNSNAEHVVF GRAHILEMEF ANPDEVCRFY EQYSRAKGFG 120 MRQGKKLKNR NGEIVRYTYL CNREGFRDRT EEGEESPNEE HCEQNSNAEH VVFGRAHILE 180 MEFANPDEVC RFYEQYEQYS GFGMRQGKKL KNRNGEIVRY TYLCNREGFR DRKWLEMQDW 240 KREHKVFTCC GCQVEMRIKQ KAESSNWYVC RFVDEHNHDL LLAKFVSYLP AYRKLSDVDR 300 AHMDSLRQVG ISIPKIYESI TAQAGGFNLV TFTKRDMTTS QCESLHAKMG RFVERRYRIL 360 DFVTNFQRCV DFLIDNEEEL DFRSLYGSPI LQTQFPGLEK SGALNYTREI FLRFREALKR 420 NVRYRGVQQI GGSESLCDTK REHKVVTRCG CQAEMRIKRK AESNNWYVCR FVDEHNHDLL 480 PAKFVSYLPA YRKLSDVDRA HMDSLRQVGI SIPKIYESIT AQAGGFNLVT FTKRDMTTSQ 540 CESLHAKMGR FVERRYRILD FVTNFQRCVD FLIDNEEELD FRSLYGSPIL QTQFPGLEKS 600 GALNYTREIF LRFREALKRN VRVSIVECNK LEDRRVYVTQ KYRRPLFRWT VGHHFGTDSF 660 FCSCMRMESF RLPCVHILAV LVQLDIGSLP ESLVL

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence Send to blast

MLCGFAAVLV KRFMSNRFLG EVVLAEAERT IPGLDACGEE NFDGFRDTGD IDATESLLDI  60
GMKTEEEELG EESPNEEHCE QNSNAEHVVF GRAHILEMEF ANPDEVCRFY EQYSRAKGFG  120
MRQGKKLKNR NGEIVRYTYL CNREGFRDRT EEGEESPNEE HCEQNSNAEH VVFGRAHILE  180
MEFANPDEVC RFYEQYEQYS GFGMRQGKKL KNRNGEIVRY TYLCNREGFR DRKWLEMQDW  240
KREHKVFTCC GCQVEMRIKQ KAESSNWYVC RFVDEHNHDL LLAKFVSYLP AYRKLSDVDR  300
AHMDSLRQVG ISIPKIYESI TAQAGGFNLV TFTKRDMTTS QCESLHAKMG RFVERRYRIL  360
DFVTNFQRCV DFLIDNEEEL DFRSLYGSPI LQTQFPGLEK SGALNYTREI FLRFREALKR  420
NVRYRGVQQI GGSESLCDTK REHKVVTRCG CQAEMRIKRK AESNNWYVCR FVDEHNHDLL  480
PAKFVSYLPA YRKLSDVDRA HMDSLRQVGI SIPKIYESIT AQAGGFNLVT FTKRDMTTSQ  540
CESLHAKMGR FVERRYRILD FVTNFQRCVD FLIDNEEELD FRSLYGSPIL QTQFPGLEKS  600
GALNYTREIF LRFREALKRN VRVSIVECNK LEDRRVYVTQ KYRRPLFRWT VGHHFGTDSF  660
FCSCMRMESF RLPCVHILAV LVQLDIGSLP ESLVL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.VKQ77

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015957359.1	1e-106	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_016191916.1	1e-107	protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11042	2	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	6e-15	FAR1-related sequence 11