PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VMB4S
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 171aa    MW: 20162 Da    PI: 10.3443
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VMB4SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.52.9e-104388147
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47
                 +fY +Y++  GF +rksk  k+  ++ei+++tfvC+++ +r+++  +
  Araip.VMB4S 43 EFYTSYSRLKGFAIRKSKRVKN-AKREIVRYTFVCNRQRFRHKKWLE 88
                 6****************99998.6667**************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-84388IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MKQMNNINHE SISTSTNHES TIPDPEDGLL NEIELFTPGE AREFYTSYSR LKGFAIRKSK  60
RVKNAKREIV RYTFVCNRQR FRHKKWLEKR AQAYNSMRFV SQFVDDHNHT LLSERFIGYL  120
LSHRNISNVE IAQMNSLKQV GISIPKIYQS FAMQVGGFNL IRFTKQDMHN E
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.VMB4S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020983204.13e-79protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_025688919.11e-82protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A444X3451e-119A0A444X345_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9185237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.13e-11FAR1-related sequence 10