PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.VQX17

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 112aa MW: 12895.9 Da PI: 10.7942

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.VQX17	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.9	1.6e-13	12	93	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +Y +YA ++ F v+++ + k + C+ g+r+++ k+ +r++++ t+Cka+ + ++k +g+w+++++e H+H+l+p Araip.VQX17 12 YYYRYAARTDFVVKIKPPVGR------LKTALHCNGDGYRTSRVKA---PKRRKTVASTNCKARYYLALDKmTGQWRISRVEVSHSHPLNP 93 8************987766......7789********999...778888999********99**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-10	12	93	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MCFGTLEDAR AYYYRYAART DFVVKIKPPV GRLKTALHCN GDGYRTSRVK APKRRKTVAS 60 TNCKARYYLA LDKMTGQWRI SRVEVSHSHP LNPKLSGIFS TNRQKNLIQQ ND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	55	KAPKRRK
2	51	57	PKRRKTV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.VQX17

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025625519.1	1e-54	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445A5C8	7e-66	A0A445A5C8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF29723	2	2