PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VR3JZ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 518aa    MW: 59316 Da    PI: 8.669
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VR3JZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1583.1e-1870156191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++  ++ei+++  +Cs+egk +++ +    +++t+++   +C a++ +   k  g w ++k++l+H+H+++p
  Araip.VR3JZ  70 KFYRNYAKAAGFSTRVRSTNRK--ENEIKNQLITCSREGKWKSKISP---TEKTNPTASLNCPARIYIYTLKdVGAWIISKVVLDHSHSCCP 156
                  6****************98887..7779*************998877...8999*************9877769**************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1570156IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186305341IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4307338IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4316343IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVPEQTLG CRSELFWFLT WCILQPLSVV DDQLVPKVGM  60
TFTTLEDAGK FYRNYAKAAG FSTRVRSTNR KENEIKNQLI TCSREGKWKS KISPTEKTNP  120
TASLNCPARI YIYTLKDVGA WIISKVVLDH SHSCCPSKAE MLKQHRELSM SIHRHIWVPI  180
YLDHHFWAGM RSTQRSESMH SFFNKFITRN SSLIQFVKQY DNCLGSREQA ERESDAADFH  240
TVIPCATKSS IEAQFQDVYT HQKFREVQTQ FRGKANYITR LTNFALGYSV YEVGEQVSSS  300
IFNKFVVTYD SVAAEVKCQC LLFESRGILC RHALSVLSFE QVSQVSPRYI LERWSKKVKR  360
RHTHIKSSHD EPLLEPRSKR FDQLVFRSQN ICEFTSESEE FTAILHRAYD NVMAEMESLK  420
AKRKGTSSLS HEDANLESVN ELQSPPRIRT RGRPKNRLGS KLDKQIANAS NKKKTKVLSE  480
INLFDAASVV HSNSSQYQGH VINYQFSVPG AGDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.VR3JZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-30far-red elongated hypocotyls 3