PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.VR6JI

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HB-other

Protein Properties

Length: 1551aa MW: 173889 Da PI: 6.0272

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.VR6JI	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.2	2.1e-11	48	92	2	46
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkv 46 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++ Araip.VR6JI 48 PKRQMKTPFQLETLEKAYALETYPSETMRAELSQKLGLSDRQLQI 92 69****************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-11	33	92	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.07E-9	34	92	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.831	44	92	IPR001356	Homeobox domain
SMART	SM00389	2.1E-4	46	100	IPR001356	Homeobox domain
Pfam	PF00046	4.8E-9	48	92	IPR001356	Homeobox domain
CDD	cd00086	1.29E-8	49	92	No hit	No description
PROSITE profile	PS50827	16.855	496	555	IPR018501	DDT domain
SMART	SM00571	1.0E-21	496	555	IPR018501	DDT domain
Pfam	PF02791	8.4E-17	498	552	IPR018501	DDT domain
Pfam	PF05066	5.6E-15	651	716	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.1E-10	789	833	IPR028942	WHIM1 domain
Pfam	PF15613	6.9E-13	972	1044	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1551 aa Download sequence Send to blast
MEGEAASDAE IENNNTQKRE DAVGDNSNEN NNGSNSKIGN SNEGQSKPKR QMKTPFQLET 60 LEKAYALETY PSETMRAELS QKLGLSDRQL QILGPEQVNE YGSGSGSGSS PLTRPEFRNV 120 VPRGGMLGYY EPPKAMMELR AIACVEAQLG QPLRDDGPIL GVEFDPLPPG AFGAPIAVTE 180 QQKRPSLAYD SKMYERHDVR TNKAMARTLP EYPFLPNQPG IRSDAFGQLN PPHLHDPIDG 240 PSRTSFPINE QLHKIHATQS HSARVRVSSQ QDKQVIPYSS PPREVDVALP RESYANIANA 300 GIDSHFADHP IAGQENPYAL PSGQVLQNDM TIRIEKKRKI DDAKIAKEVE AYETRMRKEL 360 EKQDNLRRKR EEERSRREQR REIERREKFL MKEHLRAEKR RRKEELRKEK EAERRKAALE 420 KAAARRIAKE SMELIEDEQL ELMELAATSK GLSSIIQLDL DTLQNLESFR DSLCFFPPKS 480 VKLKRPFAIQ PWIDSDQNVG NLLMVWRFLI TFADVLELWP FTLDEFVQAF HDYDSRLLGE 540 IHVTLLKVII KDIEDVARTP STGLGISQNG AANPGGGHPE IVEGAYAWGF DIRNWQKNLN 600 QLTWPEIFRQ LALSAGFGPK LKKRSITWSY ANDKDEGRSA PRRSRHRLTP GTVKFAAFHV 660 LSLEGSKGLT VLELAEKIQK SGLRDLTTSK TPEASISVAL TRDTKLFERI APSTYRFDEP 720 NVSTPNGKEN LDNDVKLDQN EFEMDLPCFV EDGYKEADCP GSVTEQPVVC EDLNTGNPDQ 780 DNMEIDESQS GESWVQGLAE GEYSDLSVEE RLNALVALVG VANEGNSIRV VLEDRLEAAN 840 ALKKQMWAEA QIDKVRLKDD TINKPDIPLL IANKVETHDT YPAAVEGSQS PMLDININTI 900 NIETSPGTAE NQKPAPAAQS LHGEKSSLIQ DLCTGTGPDH PQVQVPPQYS KRSRSQLKSY 960 IAHIAEEMCI YRSLPLGQDR RRNRYWQFVA SASSNDPGSG RIFVEYHDGN WGLIDSEEAL 1020 DILLAALDSR GIRESHLRLM LKRIEKSFKE NVRRNTQCAS AKIGSKDKFS IKSEENNGPY 1080 STPDRHVGSD SPSSTLRNLN SDKLETSSSF KIELGESENE KKAAIQRCKP LVDVCDLCLQ 1140 PYFVEDSHCK SCHRTSATNN GFSFTKHAFH CGDKLHKNVS MESSLPLRTR LLKVLFACIE 1200 ASVLPEAFGT IWTNDARKHW GVRLSKSSSV EELLQILALF EKALRRDFLS SNFSTTDELL 1260 GLSNMGGNAS LTSTDPESVA VLPWVPQTTA AVSLRLLEID SSINYVHLEI PEPCKEKEAK 1320 EYIKLPSRYT SFKCNREVEP AELGHGEFIK DKSASKKIVR SGNKRGRGSN DQGRGKKMSK 1380 RMYSSKRDTG RRNVKVNENL SDKLKQQGRV LQGSAGGRGR RTVRKRRVEK RAVEDLLLGH 1440 TAVSHSPNID REPLRRFDEE WDGERASPMT PVHIEIDDNS NSAEEVESDD NGQAVEYDQG 1500 NWEVGYNGIP ANSWGRDFAG MNVMSEGSDG MAHRVINEEG SDSSESEDSY D

Sequence ? help Back to Top

Protein Sequence Length: 1551 aa Download sequence Send to blast

MEGEAASDAE IENNNTQKRE DAVGDNSNEN NNGSNSKIGN SNEGQSKPKR QMKTPFQLET  60
LEKAYALETY PSETMRAELS QKLGLSDRQL QILGPEQVNE YGSGSGSGSS PLTRPEFRNV  120
VPRGGMLGYY EPPKAMMELR AIACVEAQLG QPLRDDGPIL GVEFDPLPPG AFGAPIAVTE  180
QQKRPSLAYD SKMYERHDVR TNKAMARTLP EYPFLPNQPG IRSDAFGQLN PPHLHDPIDG  240
PSRTSFPINE QLHKIHATQS HSARVRVSSQ QDKQVIPYSS PPREVDVALP RESYANIANA  300
GIDSHFADHP IAGQENPYAL PSGQVLQNDM TIRIEKKRKI DDAKIAKEVE AYETRMRKEL  360
EKQDNLRRKR EEERSRREQR REIERREKFL MKEHLRAEKR RRKEELRKEK EAERRKAALE  420
KAAARRIAKE SMELIEDEQL ELMELAATSK GLSSIIQLDL DTLQNLESFR DSLCFFPPKS  480
VKLKRPFAIQ PWIDSDQNVG NLLMVWRFLI TFADVLELWP FTLDEFVQAF HDYDSRLLGE  540
IHVTLLKVII KDIEDVARTP STGLGISQNG AANPGGGHPE IVEGAYAWGF DIRNWQKNLN  600
QLTWPEIFRQ LALSAGFGPK LKKRSITWSY ANDKDEGRSA PRRSRHRLTP GTVKFAAFHV  660
LSLEGSKGLT VLELAEKIQK SGLRDLTTSK TPEASISVAL TRDTKLFERI APSTYRFDEP  720
NVSTPNGKEN LDNDVKLDQN EFEMDLPCFV EDGYKEADCP GSVTEQPVVC EDLNTGNPDQ  780
DNMEIDESQS GESWVQGLAE GEYSDLSVEE RLNALVALVG VANEGNSIRV VLEDRLEAAN  840
ALKKQMWAEA QIDKVRLKDD TINKPDIPLL IANKVETHDT YPAAVEGSQS PMLDININTI  900
NIETSPGTAE NQKPAPAAQS LHGEKSSLIQ DLCTGTGPDH PQVQVPPQYS KRSRSQLKSY  960
IAHIAEEMCI YRSLPLGQDR RRNRYWQFVA SASSNDPGSG RIFVEYHDGN WGLIDSEEAL  1020
DILLAALDSR GIRESHLRLM LKRIEKSFKE NVRRNTQCAS AKIGSKDKFS IKSEENNGPY  1080
STPDRHVGSD SPSSTLRNLN SDKLETSSSF KIELGESENE KKAAIQRCKP LVDVCDLCLQ  1140
PYFVEDSHCK SCHRTSATNN GFSFTKHAFH CGDKLHKNVS MESSLPLRTR LLKVLFACIE  1200
ASVLPEAFGT IWTNDARKHW GVRLSKSSSV EELLQILALF EKALRRDFLS SNFSTTDELL  1260
GLSNMGGNAS LTSTDPESVA VLPWVPQTTA AVSLRLLEID SSINYVHLEI PEPCKEKEAK  1320
EYIKLPSRYT SFKCNREVEP AELGHGEFIK DKSASKKIVR SGNKRGRGSN DQGRGKKMSK  1380
RMYSSKRDTG RRNVKVNENL SDKLKQQGRV LQGSAGGRGR RTVRKRRVEK RAVEDLLLGH  1440
TAVSHSPNID REPLRRFDEE WDGERASPMT PVHIEIDDNS NSAEEVESDD NGQAVEYDQG  1500
NWEVGYNGIP ANSWGRDFAG MNVMSEGSDG MAHRVINEEG SDSSESEDSY D

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.VR6JI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025684101.1	0.0	homeobox-DDT domain protein RLT1 isoform X2
TrEMBL	A0A444WYV1	0.0	A0A444WYV1_ARAHY; Uncharacterized protein
STRING	GLYMA07G32180.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF30713	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator