PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VYF9M
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 244aa    MW: 26755.5 Da    PI: 8.2948
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VYF9MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.8e-071556338
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 +r+C+++ + +   fC+ ++ +lC++C    H        H+
  Araip.VYF9M 15 PRVCDTCRSAPCAVFCRADSAYLCASCDARVHAAntlasrHE 56
                 579*************************99995556666676 PP
2zf-B_box30.95.4e-1058103342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   ++C+ +e+ ++ + C+ +   lC +C   +H+       H++vp+
  Araip.VYF9M  58 VWVCEACERAPAAFLCKADAASLCSSCDADIHSAnplasrHQRVPI 103
                  689*****************************66999999**9997 PP
3CCT71.32.4e-24175218144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Araip.VYF9M 175 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 218
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-101360IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2531360IPR000315B-box-type zinc finger
CDDcd000217.61E-91660No hitNo description
PROSITE profilePS5011911.19256103IPR000315B-box-type zinc finger
PfamPF006435.0E-857103IPR000315B-box-type zinc finger
CDDcd000211.48E-859103No hitNo description
SMARTSM003367.3E-1061103IPR000315B-box-type zinc finger
PfamPF062033.8E-18175217IPR010402CCT domain
PROSITE profilePS5101716.648175217IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MLDEDTNTNT TSWAPRVCDT CRSAPCAVFC RADSAYLCAS CDARVHAANT LASRHERVWV  60
CEACERAPAA FLCKADAASL CSSCDADIHS ANPLASRHQR VPIGPMYGPP SVPVNGTNSE  120
FVGMVSVSSM EVGVVPESSI SNGSICHSRP PKGTIDLFSG PTPMQMSSYL TPMDREARVL  180
RYREKKKTRK FEKTIRYASR KAYAETRPRI KGRFAKRTDV EAEVDQMFST PLITEVGYGI  240
VPSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.VYF9M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020978310.12e-85zinc finger protein CONSTANS-LIKE 2
RefseqXP_025650165.11e-85zinc finger protein CONSTANS-LIKE 2
SwissprotQ9SK532e-66COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A445DAZ05e-82A0A445DAZ0_ARAHY; Uncharacterized protein
STRINGCagra.1194s0065.1.p8e-94(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-37CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]