PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.VZ4BS

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

YABBY

Protein Properties

Length: 213aa MW: 24063.3 Da PI: 8.719

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.VZ4BS	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	25.4	4.2e-08	2	25	2	25
YABBY 2 dvfssseqvCyvqCnfCntilavs 25 +++ ++e+vCyv+CnfCntila + Araip.VZ4BS 2 ETMMATERVCYVHCNFCNTILACQ 25 567899***************985 PP
2	YABBY	183.7	9.8e-57	45	185	23	170
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeen.lksnvekeesastsvsseklsenedeevprvppvirPP 119 vsvP++sl+++vtvrCGhC++ll+vn+ + q l ++ ++ +++++l +ee++ +k+ +++++ ++ + e ++ ++++ r+pp irPP Araip.VZ4BS 45 QVSVPYSSLLTLVTVRCGHCANLLTVNMGASLQPLIPPHQEHH----HQKQHLSFEESSsCKELGSSSSKCNKIAPFEPVE---SHQSHRIPP-IRPP 134 69***********************9998877765554233....3444444444330333333333333444444444...445555556.9* PP YABBY 120 ekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Araip.VZ4BS 135 EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 185 *************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.6E-59	44	185	IPR006780	YABBY protein
SuperFamily	SSF47095	2.36E-8	129	178	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.0E-5	133	179	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
METMMATERV CYVHCNFCNT ILACQKKSDA HPQQCSTKIL NHKCQVSVPY SSLLTLVTVR 60 CGHCANLLTV NMGASLQPLI PPHQEHHHQK QHLSFEESSS CKELGSSSSK CNKIAPFEPV 120 ESHQSHRIPP IRPPEKRQRV PSAYNRFIKE EIQRIKASNP DISHREAFST AAKNWAHFPH 180 IHFGLKMDGN NDKQAKLDHN NGEGTQKSSN GFY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.VZ4BS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090571	1e-127	BT090571.1 Soybean clone JCVI-FLGm-4H4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016188474.1	1e-135	putative axial regulator YABBY 2 isoform X1
Refseq	XP_025643184.1	1e-135	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	1e-68	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A445E1E9	1e-126	A0A445E1E9_ARAHY; Uncharacterized protein
STRING	GLYMA12G10210.3	3e-90	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-65	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]