PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.W1EXI

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 518aa MW: 57707.3 Da PI: 7.0731

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.W1EXI	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00053	413	445	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A+ YIk Lq Araip.W1EXI 413 DKITALQQIVSPF-----GKTDTASVLFEAIGYIKFLQ 445 7888889988887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.343	395	444	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-8	410	452	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-9	410	460	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.46E-4	413	449	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MAEGCGGNSV ATTSPASFNW WYLHANHATN TNAYNNHHHH QTNPNNSSSC SCEEDISVST 60 SFTNASNHST LTVDSSRRLL DPSSNNNHFL PEHAEDNHLW NHVLSAVGSN GELHNNEEMG 120 EMKFLDALSS KNMTSSMFEE PACDYLKKLD TTTSWEYSGG STSSSFNNSF EKHLNNNNNN 180 NGFSDDALIE NNERLTKLSN LVSTWSIAPP DPEVSSSHFD HPPTNNNHHQ FPQSHHHHDP 240 NCNFKQQVFI GDSTSYPPIS SYDHPTKVKE EFHHHQTNSG FQNGLINGLS SVMGGDSGNK 300 FYHGLPNLSS CTRNISDVIS FNSRLGRPVL GIHAQKPNIK YMNNLSESKK QQGLQTTPPI 360 NRSNNGRVEG TTAREVKKKR SEESSEAILK KPKQDTSTAS STKVQAPKVK LGDKITALQQ 420 IVSPFGKTDT ASVLFEAIGY IKFLQEQVQL LSNPYLKSNS HKDPWGSLDR KDHHKEDAKL 480 DLRTRGLCLV PTSCTPLIYR ENSGPDYWTP AYRGCLYR

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MAEGCGGNSV ATTSPASFNW WYLHANHATN TNAYNNHHHH QTNPNNSSSC SCEEDISVST  60
SFTNASNHST LTVDSSRRLL DPSSNNNHFL PEHAEDNHLW NHVLSAVGSN GELHNNEEMG  120
EMKFLDALSS KNMTSSMFEE PACDYLKKLD TTTSWEYSGG STSSSFNNSF EKHLNNNNNN  180
NGFSDDALIE NNERLTKLSN LVSTWSIAPP DPEVSSSHFD HPPTNNNHHQ FPQSHHHHDP  240
NCNFKQQVFI GDSTSYPPIS SYDHPTKVKE EFHHHQTNSG FQNGLINGLS SVMGGDSGNK  300
FYHGLPNLSS CTRNISDVIS FNSRLGRPVL GIHAQKPNIK YMNNLSESKK QQGLQTTPPI  360
NRSNNGRVEG TTAREVKKKR SEESSEAILK KPKQDTSTAS STKVQAPKVK LGDKITALQQ  420
IVSPFGKTDT ASVLFEAIGY IKFLQEQVQL LSNPYLKSNS HKDPWGSLDR KDHHKEDAKL  480
DLRTRGLCLV PTSCTPLIYR ENSGPDYWTP AYRGCLYR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.W1EXI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016177515.1	0.0	transcription factor bHLH111
TrEMBL	A0A444XS94	0.0	A0A444XS94_ARAHY; Uncharacterized protein
STRING	GLYMA10G35040.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10116	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	6e-54	bHLH family protein