PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.W21RY

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 250aa MW: 29041.5 Da PI: 9.9801

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.W21RY	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.1	1.9e-15	11	96	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++ +k +GFs++++++++ ++i+++ vCs+eg r+++ + + +t+++ +C a++ v+ +k + w ++k+ l+H+H+++ Araip.W21RY 11 KFYKHCSKLAGFSTKIRNTTRD--GDKIKNQLIVCSREGMRKSKISP---TLKTNPSAGLNCPARIYVQIMKdISLWTISKVILNHSHPCC 96 6**************98776..8889**********99877...999**************9899***********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-12	11	96	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MIFKTLEEAG KFYKHCSKLA GFSTKIRNTT RDGDKIKNQL IVCSREGMRK SKISPTLKTN 60 PSAGLNCPAR IYVQIMKDIS LWTISKVILN HSHPCCADQA EMLKQHRELS MFVRRTIETY 120 EEAGIRPSKT YQSFVAAAGS HRELELYENR HIWILVYLDH HFWARVRSTQ RSESMHSFFN 180 KFITRNSSLR QFMKQYDNCL ASKEQAEREF DAADFHIVIP CTTKLAIEAQ FSVYIPMRSS 240 GKFKLNSEVK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.W21RY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016177749.1	1e-104	uncharacterized protein LOC107620038
TrEMBL	A0A444WXS8	1e-156	A0A444WXS8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	4e-09	FAR1 family protein