PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.W28KY
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Dof
Protein Properties Length: 351aa    MW: 37194 Da    PI: 9.0569
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.W28KYgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.92.1e-3872131362
       zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  e a+kcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++
  Araip.W28KY  72 EPAQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 131
                  56899****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2955120IPR003851Zinc finger, Dof-type
PfamPF027013.7E-3274129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.31175129IPR003851Zinc finger, Dof-type
PROSITE patternPS01361077113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVYTSIPAYI DPVNWHEQQQ PNHQQNNTGG TSSQLLHPPP PPLPPSTQQH GASIRPGSMA  60
DRARMANIPM QEPAQKCPRC ESTNTKFCYF NNYSLSQPRH FCKTCRRYWT RGGALRNVPV  120
GGGCRRNKRT KGTTTSNNSS KSPPPSSDRG GPTVSGGSFA SEIAGLSPPV PSSLRFMAPL  180
MHHQQLGDHF SGVGGGDLGL NYAAISGPMG GICDLNFHIG SALSSGGTGG GNEGSSFLSA  240
AGLEQWRVPQ TQQFPFFTGL EASSHGLYQF ENSTSEGSGY GGGSGGSGGA IRPNKVSTFA  300
SVVKMEESNN NLPRQFLGMN SNSSSNSEHF VPASWTHLSG FTSSNTTNNP P
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.W28KY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016198319.10.0dof zinc finger protein DOF2.4 isoform X2
RefseqXP_025647090.10.0dof zinc finger protein DOF2.4
TrEMBLA0A444ZN350.0A0A444ZN35_ARAHY; Uncharacterized protein
STRINGXP_004515618.11e-107(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.13e-41OBF-binding protein 3