PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.W4GIV
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 513aa    MW: 58644.3 Da    PI: 8.5688
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.W4GIVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.77e-1751137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+e k +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.W4GIV  51 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSRERKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137
                  6***************998776..8889************9998777...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-1451137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.075300336IPR007527Zinc finger, SWIM-type
PfamPF044342.9E-4301333IPR007527Zinc finger, SWIM-type
SMARTSM005750.0054311338IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDELVPKVG MTFTTLEDAE KFYRNYAKAA  60
GFSTRVRCTN RKGNEIKNQL ITCSRERKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDHH IWVPIYLDHH  180
FWAGMRSTQR NESMHSFFNK YITRNSSLIQ FLKQYDNCLG SREQAERESD AADFHTVIPC  240
ATKSSIEAQF QDAYTHAKFR EVQAQFRGKA NCITRLKNSA LGYSVYEVGE QVSSSIFNKF  300
VVTYDSVAVE VKCQCLLFES RGIVCRHALS VLSFKQVSQV SPRYILERWS KKVKRRHTHI  360
KSSHDEPLME PRSKRFDQLV FRSQNICEFA SESEELTAIL HRAYDNVMAE MESLKVKRKG  420
TSSLSHEDAN LESVNELQSP PRIRTRGHPK NMLGSKLDKQ IANATKKKKT KVLSEINLFD  480
AASAVHSNSS QYQGHVMNYQ FRVPAAGDNS LGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.W4GIV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-33far-red elongated hypocotyls 3