PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.W4GJ9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 258aa    MW: 28944.7 Da    PI: 7.4676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.W4GJ9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-1277124355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++h+e+ErrRR+riN  +++Lr l+ +       K++Ka+iL k+v  +k+Lq
  Araip.W4GJ9  77 KNHSEAERRRRERINGHLATLRGLVSST-----DKMDKATILSKVVSQVKELQ 124
                  58*************************7.....6****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.93974123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1377126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1077124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1378126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-1280129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.07E-4159231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVYSFYNSNH SSSPGFDVSR LISPSLHDYG ASYGGLEPSH ALILESEKIE QVNNGSEDAR  60
VGKNYENSDA KALAALKNHS EAERRRRERI NGHLATLRGL VSSTDKMDKA TILSKVVSQV  120
KELQRNAMEA SKGLLIPTDF DEVEVEPYED HRSMSYKASI CCDYRPEILF DLRHTLDALE  180
LQLVRAEIST LEGRMKNVFV YRCCKGKGDN NNTEACQALA RNVQKALSLV IDKASNALEY  240
SLRASLPCKR RRICLLEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287ERRRRE
2248252KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.W4GJ9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016190005.10.0putative transcription factor bHLH107
RefseqXP_025638392.10.0putative transcription factor bHLH107
TrEMBLA0A444ZWT50.0A0A444ZWT5_ARAHY; Uncharacterized protein
STRINGXP_004505138.11e-101(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.15e-34bHLH family protein