PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.W59LW
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 412aa    MW: 47162.3 Da    PI: 8.0321
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.W59LWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.81.7e-1851137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++  ++ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++ +H+H+++p
  Araip.W59LW  51 KFYRNYAKAAGFSTRVQSTNRK--ENEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVMDHSHPCCP 137
                  6****************98887..7779*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.9E-1651137IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.827282318IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-4283315IPR007527Zinc finger, SWIM-type
SMARTSM005750.0018293320IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDDSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDQFVPKVG MIFTTLEDAG KFYRNYAKAA  60
GFSTRVQSTN RKENEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVMD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEAVPIYMDH HFWAGMRSTQ  180
RSESTHSFFN KFITRNSSLI QFVKQYNNCL ESREQAERES NAADFRSYRV QPNPPLKLSF  240
KMEVQAQFRG KANCITRLTN SALGYSVYEV GEQVSSSIFN KFVVTYDSVA AEIKCQCLLF  300
ESRGILCHHA LSVLSFERSK KVKRRHTHIK SSHDEPLLEP RSKRFDQLVF RSQNICEFAS  360
KSEEVTAILH RAYDNVMAEM ESLKAKRKGT CSLSHEDANL ESVNELESQP RI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.W59LW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-141protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-19far-red elongated hypocotyls 3