PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.W5H5G
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 238aa    MW: 28205.7 Da    PI: 8.8983
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.W5H5GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll ++v+++G  +W+++a+  g++R++k+c++rw +yl
      Araip.W5H5G 14 KGSWTHEEDKLLTEYVTLHGECRWSSVAKFTGLNRSGKSCRLRWVNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding49.31.1e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g  T+ E+ ++ ++++ lG++ W+tIar+++ gRt++++k++w+++
      Araip.W5H5G  67 KGQLTPMEEGIIFELHAILGNK-WSTIARYLP-GRTDNEIKNYWRTH 111
                      5778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.449961IPR017930Myb domain
SuperFamilySSF466891.8E-2911108IPR009057Homeodomain-like
SMARTSM007171.7E-151363IPR001005SANT/Myb domain
PfamPF002497.4E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-211568IPR009057Homeodomain-like
CDDcd001671.34E-101661No hitNo description
PROSITE profilePS5129423.24962116IPR017930Myb domain
SMARTSM007178.7E-1366114IPR001005SANT/Myb domain
PfamPF002496.7E-1367111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2369115IPR009057Homeodomain-like
CDDcd001676.69E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVIMIMGSER GWKKGSWTHE EDKLLTEYVT LHGECRWSSV AKFTGLNRSG KSCRLRWVNY  60
LRPGLKKGQL TPMEEGIIFE LHAILGNKWS TIARYLPGRT DNEIKNYWRT HFKKKEDSKH  120
NNKKLKKRRS KVTKEQVVME DTNKSNNNEN TKSYDDETKE NYYNDQHNNM GFIYPNNNPT  180
MLLEQQQSFP LMHQDYLSSP SWPDTTTADY DAFLWFSLWD FDVPQGFEEH VNNLTKYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141187110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112128KKKEDSKHNNKKLKKRR
2125130KKRRSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.W5H5G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016196272.21e-177transcription factor WER
RefseqXP_025645079.21e-177transcription factor WER
TrEMBLA0A444WN261e-178A0A444WN26_ARAHY; Uncharacterized protein
STRINGXP_007139421.14e-81(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.13e-59myb domain protein 121