PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.W6M4V

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 327aa MW: 35792.3 Da PI: 5.2122

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.W6M4V	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.3	0.00016	162	189	4	30
HHHHHHHH.HHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErr.RRdriNsafeeLrellPka 30 + +erE++ RR++iN ++ L+el+P + Araip.W6M4V 162 KRKEREKKaRREKINARMKLLQELVPGC 189 457888766*****************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-10	155	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.51E-6	156	222	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-9	157	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.493	159	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.8E-5	164	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEQATGVLRG STHDDVVLES IQFNEEIRGI MAPAPAPENA SSFTALLELP PTQAVELLHS 60 PDCPAAAREP PCHVSTNQKP YLLCSYGGNL TFPSNAALIE RAAKFSVFAG ENSPPEDAAR 120 LAPVAVSGVV KNEPQETDSN PSSTQGCVSD PAVDTKNQKT AKRKEREKKA RREKINARMK 180 LLQELVPGCN KVGFPFLVVI SGTALVLDEI INHVQSLQRQ VEFLSMKLAA VNPRIDFSLD 240 SLLATDGSSV MDSNLTSMAS PVMWPENLAN GNRQHFQQQW QFDAFHQPLW GREEANHNFM 300 TPEHSLLSYD SSANSASLQS NQLKMEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.W6M4V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015969486.1	0.0	LOW QUALITY PROTEIN: transcription factor bHLH48
Swissprot	Q8VZ02	7e-72	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A445CLF4	0.0	A0A445CLF4_ARAHY; Uncharacterized protein
STRING	XP_007162273.1	1e-175	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4985	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	1e-61	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]