PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.W7HYQ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 280aa    MW: 32274 Da    PI: 6.6144
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.W7HYQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-152168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll + ++  G g+W++ a++ g++Rt+k+c++rw++yl
      Araip.W7HYQ 21 RGPWTLEEDNLLTQSIANQGEGRWNLLAKCSGLKRTGKSCRLRWLNYL 68
                     89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.5621672IPR017930Myb domain
SuperFamilySSF466899.77E-2219104IPR009057Homeodomain-like
SMARTSM007171.4E-132070IPR001005SANT/Myb domain
PfamPF002491.3E-132168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-212275IPR009057Homeodomain-like
CDDcd001676.34E-102368No hitNo description
PROSITE profilePS500904.57769136IPR017877Myb-like domain
SMARTSM007170.2373110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-876111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MMSSSKSVSS SGSEDDNEIR RGPWTLEEDN LLTQSIANQG EGRWNLLAKC SGLKRTGKSC  60
RLRWLNYLKP DVKRGNLTPQ EQLLILELHS KWGNRTDNEI KNYWRTKIQK QARHLKIDTD  120
SREFEELVRR FWIPRLLQKA RESSSSSALP IQNQATMPVS QYSAAAITPP PCVHPTCPNY  180
LDQRLEQHSN GSCVSFSEPK LPQLLGYNSN HFGNGLDTDE FGTFTYDYGY HVNSNGYDNE  240
TLNMEYPVDD CQMARHNWVN DFACDLWNMD ECCQFSNFKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-15181194110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.W7HYQ
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193392.10.0transcription factor MYB62
RefseqXP_016193394.10.0transcription factor MYB62
RefseqXP_025644266.10.0transcription factor MYB62
SwissprotQ9C9G71e-66MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A445A2J10.0A0A445A2J1_ARAHY; Uncharacterized protein
TrEMBLA0A445A2L30.0A0A445A2L3_ARAHY; Uncharacterized protein
STRINGGLYMA08G04670.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-68myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]