PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.W8RW3
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 249aa    MW: 27944.8 Da    PI: 8.8808
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.W8RW3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171963146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg W + Ede+l ++v+q+G  +W++Ia++++ gR+++ +k++w+ 
      Araip.W8RW3 19 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSDNAVKNHWHV 63
                     899*****************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.291469IPR017930Myb domain
SMARTSM007179.5E-141867IPR001005SANT/Myb domain
PfamPF002491.0E-151962IPR001005SANT/Myb domain
SuperFamilySSF466897.9E-141970IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-182069IPR009057Homeodomain-like
CDDcd001671.44E-132262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEDSSNNNNT CDDSKICPRG HWRPAEDEKL RQLVEQYGAQ NWNSIAEKLQ GRSDNAVKNH  60
WHVIMARKQR EQSKICGKRT FQDMMIFNNN NDSNSSSSSS NIIKRPARVI GLEYSRFFDF  120
RNLDSNKAST SWNFASSVPP TVTDSFRKGG GGKDYFTING SNIYLPEGSR TSDRFYCRVF  180
PGPSTTTTAT TAPFGSSNGF SSSLQNYKRI VPNPFAFKGS STEKEKEEDH EPKNEVPFID  240
FLGVGVSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.W8RW3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020961987.11e-151myb-like protein AA
TrEMBLA0A445BSY71e-140A0A445BSY7_ARAHY; Uncharacterized protein
STRINGGLYMA04G42110.28e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2870222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-21myb domain protein 52