PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.WBA01

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 499aa MW: 57089.6 Da PI: 8.3721

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.WBA01	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.8	5.7e-16	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+ +++p Araip.WBA01 51 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSYPCCP 137 6*************998776..8889*********998877...8999**********998879**********998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-13	51	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.186	300	336	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-4	302	333	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	311	338	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MDHSTSDCQL NAGEVDYESE SNEVPEPLSV VDDELVPKVG MTFTTLEDAE KFYRNYAKAA 60 GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSYPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDQH 180 FWTGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG SNEQAERESD AADFHTLIPC 240 ATKSCIEAQF QDVYTHAKFR EVQAQFRGKA NCITRLKNSA LGYSVYDVGE QVSSSIFNKF 300 VVTYDSVAAE VKCQCLLFES RGILCRHALS VLSFEQVSQV SPRYILERWS KKVKRRHTHI 360 KSSHDEPLME PRSKRFDQLV FRPQNICEFA SESEELTAIL HRAYDNVMAE MESLKAKRKG 420 TSSLSHEDAN LESVNELQSP PRIRTRGRPK NRLGSKLEKQ IANATKKKKT KVLSEINLFD 480 AASVAHSNCS QYQGHVMSY

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MDHSTSDCQL NAGEVDYESE SNEVPEPLSV VDDELVPKVG MTFTTLEDAE KFYRNYAKAA  60
GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSYPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDQH  180
FWTGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG SNEQAERESD AADFHTLIPC  240
ATKSCIEAQF QDVYTHAKFR EVQAQFRGKA NCITRLKNSA LGYSVYDVGE QVSSSIFNKF  300
VVTYDSVAAE VKCQCLLFES RGILCRHALS VLSFEQVSQV SPRYILERWS KKVKRRHTHI  360
KSSHDEPLME PRSKRFDQLV FRPQNICEFA SESEELTAIL HRAYDNVMAE MESLKAKRKG  420
TSSLSHEDAN LESVNELQSP PRIRTRGRPK NRLGSKLEKQ IANATKKKKT KVLSEINLFD  480
AASVAHSNCS QYQGHVMSY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.WBA01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-34	far-red elongated hypocotyls 3