PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.WJ7G8
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 123aa    MW: 13967.1 Da    PI: 10.1397
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.WJ7G8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.71.8e-292272151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs +gkl+ +ss
  Araip.WJ7G8 22 KRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIVFSCKGKLFQFSS 72
                 79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.3281474IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-391473IPR002100Transcription factor, MADS-box
CDDcd002652.71E-421592No hitNo description
SuperFamilySSF554551.44E-331598IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-301636IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001670IPR002100Transcription factor, MADS-box
PfamPF003194.4E-262370IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-303651IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-305172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
KVFDQSSGAE LCGMGRGRVQ LKRIENKINR QVTFSKRRAG LLKKANEISV LCDAEVALIV  60
FSCKGKLFQF SSDPCMEKIL ERYERYSYAE RQLVANDQGP NEFYGTRSAM LKSKRASEFR  120
TAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-221487173MEF2 CHIMERA
6byy_B1e-221487173MEF2 CHIMERA
6byy_C1e-221487173MEF2 CHIMERA
6byy_D1e-221487173MEF2 CHIMERA
6bz1_A1e-221487173MEF2 CHIMERA
6bz1_B1e-221487173MEF2 CHIMERA
6bz1_C1e-221487173MEF2 CHIMERA
6bz1_D1e-221487173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.WJ7G8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020988998.18e-61truncated transcription factor CAULIFLOWER A-like
RefseqXP_025623911.12e-60truncated transcription factor CAULIFLOWER A
RefseqXP_025684521.12e-60truncated transcription factor CAULIFLOWER A
SwissprotQ393713e-503AP1_BRAOL; Floral homeotic protein APETALA 1
TrEMBLA0A445B3R94e-59A0A445B3R9_ARAHY; Uncharacterized protein
STRINGXP_004508656.11e-54(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-51MIKC_MADS family protein