PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.WMJ25
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 237aa    MW: 27435.7 Da    PI: 9.6164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.WMJ25genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.9e-07101120120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C+k+F+r  nL+ H+
  Araip.WMJ25 101 FSCPVCPKTFNRYNNLQMHM 120
                  89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.85E-696124No hitNo description
PROSITE profilePS5015710.866101128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5101120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SuperFamilySSF576679.45E-5167205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MTPRIYNICS CYIIPCTRIN LIAKKMNQKQ LEPLPLLSSF LGSSTCSSSE QNQNLKEDVT  60
VALHIGLPDN SHDNHNVEPL QAPNNYWIPT EEQIIIGFSH FSCPVCPKTF NRYNNLQMHM  120
WGHGSEYRRG PESLKRTHPR PLLEIACYCC KGGCKNNIEH PRAKPLKDFR TLQTHYKRKH  180
GPKPFSCRKC SKNLAVKGDW RTHEKNCGKR WLCLCGSDFK HKRSLKDHIK AFGFDWK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136ESLKRT
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.WMJ25
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193713.21e-176protein TRANSPARENT TESTA 1-like
RefseqXP_025640037.11e-176protein TRANSPARENT TESTA 1
SwissprotQ8VWG35e-90TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A444ZS661e-152A0A444ZS66_ARAHY; Uncharacterized protein
STRINGGLYMA14G35140.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.15e-92C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]