PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.WRR5C
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 431aa    MW: 49688.2 Da    PI: 7.9529
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.WRR5CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.15.3e-1769155191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+e k +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.WRR5C  69 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSRERKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 155
                  6***************998776..8889************9998777...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1469155IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.371311347IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-4318344IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011322349IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPETLGC RSIPFWVYYI RHDWPLSVVD DELVPKVGMT  60
FTTLEDAGKF YRNYAKAAGF STRVRCTNRK GNEIKNQLIT CSRERKWKSK ISPTEKTNPT  120
AGLNCPARIY IHTLKDVGAW IISKVVLDHS HPCCPSKAEM LKQHRELSMS IRRTIENNEE  180
ADRHIWVPIY LDHHLWAGMK STQRSESMHS FFNKYITRNS SLIQFVKQYD NCLGSREQAE  240
RESDAADFHT VIPCATKSSI EAQFQDAYTH AKFREVQAGK ANCITRLKNS ALGYSVYEVG  300
EQVSSSIFNK FVVTYDSIAA EVKCQCSLFE SRGILCRHAL SVLSFEQVSQ VSHRYILERW  360
SKKVKRRHTH IKSSHDEPLM DPRSKRFYQL IFCSQNICEF ASESEELTAI LHRAYDNVMA  420
EDNIHPTQLT K
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.WRR5C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-158protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-31far-red elongated hypocotyls 3