PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.WS15M

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 287aa MW: 32610.4 Da PI: 7.8325

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.WS15M	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4.2e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl Araip.WS15M 14 KGLWSPEEDEKLLNYITNHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-27	6	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.478	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	5.35E-23	12	100	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	7.7E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	5.62E-11	17	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.5E-16	65	108	IPR009057	Homeodomain-like
SMART	SM00717	0.87	66	106	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	8.488	66	108	IPR017930	Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQEEEDLIIE LHAIAARLPG RTDNEIKNLW NSCLKKKLRQ KGIDPITNKP 120 LSDVVPIENN KNKKEEEEKP PTTTERFEGP PSDSVGGYFS FNYQQMMNNF GATPQNATSS 180 SAVGSSDTNF VANNILTWEQ EEVKWCEYLN TLLLNNTVVQ NHSSSSSHSV MYGGGGEVIT 240 KPETTSFMRQ DSSSSSWHHH SQQQPHQFSD MYTKDLQRFS VAFGQSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-20	12	108	5	108	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	109	LKKKLRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269\|PubMed:16005292, ECO:0000269\|PubMed:19401413, ECO:0000269\|PubMed:22708996, ECO:0000269\|PubMed:23741471, ECO:0000269\|PubMed:28207974}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.WS15M

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016177087.1	1e-179	transcription factor MYB61
Refseq	XP_020966984.1	1e-179	transcription factor MYB61
Refseq	XP_025677800.1	1e-179	transcription factor MYB61
Swissprot	Q8VZQ2	6e-78	MYB61_ARATH; Transcription factor MYB61
TrEMBL	A0A444XJ41	1e-177	A0A444XJ41_ARAHY; Uncharacterized protein
STRING	XP_004495813.1	2e-93	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1083	33	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G57560.1	4e-80	myb domain protein 50

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Matías-Hernández L, et al. AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana. Plant J., 2017. 90(3): p. 520-534 [PMID:28207974]