PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.WT9GE

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 135aa MW: 15777.1 Da PI: 10.4223

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.WT9GE	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.2	4.3e-16	48	134	2	87
FAR1 2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 Y++Y k+vGF r+++++ k++++ +++ Cs++g+re++ k+ + r + t Cka++ v +++ +++w+v+klel+H+H Araip.WT9GE 48 LYSNYVKKVGFMNRIRNTNFDktrKESRTPINQSIHCSRKGYRESRVKA---ATRVKRITTARCKARMYVMLDRqKDNWMVSKLELKHTH 134 7********99988877664456777889***********999...7888889999*****9998************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-13	48	134	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
GKESVDVIQL EDNATALNHE LSDHTGIPIE EIPYVGLRFV SLQQAQELYS NYVKKVGFMN 60 RIRNTNFDKT RKESRTPINQ SIHCSRKGYR ESRVKAATRV KRITTARCKA RMYVMLDRQK 120 DNWMVSKLEL KHTHL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.WT9GE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016172912.1	2e-96	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YDG0	8e-82	A0A444YDG0_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14126	2	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	6e-11	FAR1 family protein