PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.WU1YN
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 168aa    MW: 19387.2 Da    PI: 9.864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.WU1YNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-112271455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                   +++Er+RR+++++ +++L +llP+ +   p + l   +   +Av+YIksL+
  Araip.WU1YN 22 ERKIIERNRRNKMKDLYSKLNSLLPSyS---PTEVLPLPDQIDEAVKYIKSLE 71
                 5689**********************55...8888****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-121787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.0111870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-52070No hitNo description
Gene3DG3DSA:4.10.280.107.4E-112088IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-82271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-42476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDHHHQQQQQ QGSEPSTTTK VERKIIERNR RNKMKDLYSK LNSLLPSYSP TEVLPLPDQI  60
DEAVKYIKSL EKKVKMAKEK KERLLKGRNN NKRSRGFDEK NITKSPTIDV HEMGNSLLQV  120
VLTCGFENKF LFSEIIRILH EEKVEVVSAN SSSHGDSMIH VLHAEVIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.WU1YN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020963768.11e-119transcription factor bHLH162-like
TrEMBLA0A445BXX73e-93A0A445BXX7_ARAHY; Uncharacterized protein
STRINGGLYMA12G12880.19e-61(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-24bHLH family protein