PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.WWW17
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 158aa    MW: 17491.9 Da    PI: 6.7834
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.WWW17genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000161840123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C  C++ F++   L  H++ H
  Araip.WWW17 18 YECVFCKRGFTTAQALGGHMNIH 40
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.05E-61545No hitNo description
Gene3DG3DSA:3.30.160.601.4E-41544IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0741845IPR007087Zinc finger, C2H2
PROSITE patternPS0002802040IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEEEDTDPSP PETAGRSYEC VFCKRGFTTA QALGGHMNIH RKDKANNRTK PTTTFLIPSS  60
LISSSSTQLH NSDHHLGFYY FSSSTSRRNT YEVHSDCSSS NQGYFPPPKE RNLSSCNNNN  120
NNNPSSSSCV AQVKDKVQDN SDEGGGLDLE LRLGHHHP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.WWW17
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207412.11e-115zinc finger protein 10
RefseqXP_025660798.11e-115zinc finger protein 10
TrEMBLA0A444YGF01e-113A0A444YGF0_ARAHY; Uncharacterized protein
STRINGGLYMA13G18161.13e-22(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-13C2H2 family protein