PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.WXN4V

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 505aa MW: 57793.4 Da PI: 8.4723

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.WXN4V	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.8	2e-19	75	166	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fY +YA+ F rk+ ++ + ng+i +r++vC+k g+r+ ++ k ++++r++ra tr++C+a+++ +++ +gkw+v+ +e+eHnH+l+p Araip.WXN4V 75 EFYAKYARCYRFVSRKDLKTV-DANGNINTRQLVCNKAGERHWKHLKrDNRQREHRAITRVNCRARIRFIRHYrTGKWKVSVFESEHNHPLCP 166 6*********988886555.69999**********9887664789999**********888877***************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-16	75	166	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.052	274	310	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-4	285	312	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	9.7E-4	287	309	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MENDGKESYK DGDQSEDLSV EYECSSDESD DMVDVTVDEV EEDIINAGGL EKLITDLTIE 60 DIWGLVFDTE SHVCEFYAKY ARCYRFVSRK DLKTVDANGN INTRQLVCNK AGERHWKHLK 120 RDNRQREHRA ITRVNCRARI RFIRHYRTGK WKVSVFESEH NHPLCPPKFR HLIIANCGLD 180 EADKTQVDSL RACVRHYRNN HLTADFETFY KFPVLTTCLE SFEKQAAELY TRNIFKLVKD 240 EIEAAGALNV TEYPNSGDIV EYNTSEYFNQ QWEFKVSYNK GKDLFACECR LFEIRGLPCS 300 HIFGVLKHRN KKCVPTSLIL KRWTRDAKNT ADNIVPTLRC GAMSSICWKL CDISSKNSAD 360 YREISGELLK LISKVQNKGD AQARLSPTSA LIGDPAVVKS KGAPRKVPKG QKRRRCSHCK 420 LSRHFVRTCL LLAKEDSRAE YSNAEDEPMV EECDANKQTP SQNTKSVENT PVHNNNNFKF 480 KGCGSKKSVS KLTETPKIRA NGKKS

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MENDGKESYK DGDQSEDLSV EYECSSDESD DMVDVTVDEV EEDIINAGGL EKLITDLTIE  60
DIWGLVFDTE SHVCEFYAKY ARCYRFVSRK DLKTVDANGN INTRQLVCNK AGERHWKHLK  120
RDNRQREHRA ITRVNCRARI RFIRHYRTGK WKVSVFESEH NHPLCPPKFR HLIIANCGLD  180
EADKTQVDSL RACVRHYRNN HLTADFETFY KFPVLTTCLE SFEKQAAELY TRNIFKLVKD  240
EIEAAGALNV TEYPNSGDIV EYNTSEYFNQ QWEFKVSYNK GKDLFACECR LFEIRGLPCS  300
HIFGVLKHRN KKCVPTSLIL KRWTRDAKNT ADNIVPTLRC GAMSSICWKL CDISSKNSAD  360
YREISGELLK LISKVQNKGD AQARLSPTSA LIGDPAVVKS KGAPRKVPKG QKRRRCSHCK  420
LSRHFVRTCL LLAKEDSRAE YSNAEDEPMV EECDANKQTP SQNTKSVENT PVHNNNNFKF  480
KGCGSKKSVS KLTETPKIRA NGKKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	407	413	PKGQKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.WXN4V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025678994.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445CHF4	0.0	A0A445CHF4_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15352	2	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-18	FAR1-related sequence 5